STEPTRACKERMICROBIOLOGY + GASTROENTEROLOGY | CURVED GRAM-NEGATIVE ROD | HIGH-YIELD REVIEW

Helicobacter pylori

A curved, flagellated rod that lives under the gastric mucus by making ammonia — the commonest chronic bacterial infection and a class I carcinogen.

FOCUS ON
Biology: curved gram ⁻ rod, flagella, oxidase ⁺, catalase ⁺, urease ⁺ (NH₃ buffers acid), CagA and VacA toxins. Disease by site: antral gastritis → ↑ gastrin → duodenal ulcer (~90%); pangastritis → atrophy, intestinal metaplasia → gastric ulcer, gastric adenocarcinoma (intestinal type); chronic B-cell stimulation → MALT lymphoma (can regress with eradication). Tests: urea breath test, stool antigen (active infection), biopsy + rapid urease; serology can't confirm cure. Treat: PPI + clarithromycin + amoxicillin (or metronidazole), or bismuth quadruple therapy.
TOPIC
MECHANISM
CLINICAL PICTURE
CLUE · MANAGEMENT
Colonization
Flagella move through mucus; urease → NH₃ neutralizes acid locally; adhesins bind epithelium
Acquired in childhood (fecal-oral, oral-oral); most never get symptoms
More common in low-income settings
Chronic gastritis (antral)
Inflammation of antrum → ↓ somatostatin (D cells) → ↑ gastrin → ↑ acid
Dyspepsia; may be asymptomatic
Type B gastritis (vs autoimmune type A in body/fundus)
Duodenal ulcer
Excess acid reaching duodenum → gastric metaplasia → H pylori colonizes it
Epigastric pain better with meals, worse 2–3 h later and at night
Strongest H pylori association
Gastric ulcer
Weakened mucosal defense (H pylori, NSAIDs)
Pain worse with meals, weight loss
Biopsy to exclude cancer
Gastric adenocarcinoma
Chronic pangastritis → atrophy → intestinal metaplasia → dysplasia
Weight loss, early satiety, anemia
Intestinal-type cancer · CagA ⁺ strains ↑ risk
MALT lymphoma
H pylori antigens drive marginal-zone B-cell proliferation
Gastric mass or thickened folds
Low-grade lesions may regress after eradication alone
Urea breath test
Labeled urea → bacterial urease → labeled CO₂ exhaled
Diagnosis and test of cure
Stop PPIs 2 weeks, antibiotics/bismuth 4 weeks before (false negatives)
Stool antigen
Detects active infection
Diagnosis and test of cure
Same PPI caveat
Endoscopic biopsy
Histology (curved rods on surface) + rapid urease test
Patients ≥ 60 or with alarm features
Alarm: bleeding, weight loss, dysphagia, anemia
Serology
IgG persists after cure
Shows past or present exposure
Can't confirm eradication
Triple therapy
PPI + clarithromycin + amoxicillin (metronidazole if penicillin allergy)
Where clarithromycin resistance is low
Confirm cure afterward
Bismuth quadruple therapy
PPI + bismuth + metronidazole + tetracycline
First-line in many areas (clarithromycin resistance)
Bismuth → black stool and tongue

Mechanism — antral infection to duodenal ulcer

Antral H pylori
→
↓ D-cell somatostatin
→
↑ Gastrin → ↑ acid
→
Duodenal ulcer
Body/pangastritis
→
Atrophy, ↓ acid
→
Metaplasia → cancer

Which test, when

TEST
SHOWS
TEST OF CURE?
Urea breath test
Active infection
Yes
Stool antigen
Active infection
Yes
Biopsy + rapid urease
Active infection, histology
Yes (if scoping)
Serology
Any exposure
No

How it's tested

COMMON CONFUSIONH pylori gastritis is in the antrum (type B); autoimmune gastritis is in the body/fundus (type A) with anti-parietal cell antibodies and B12 deficiency.
THE TRAPA negative breath test in a patient on a PPI may be false — stop the PPI first.
YOUR APPROACHUlcer or dyspepsia → test for active infection → treat by local resistance → confirm eradication → biopsy if alarm features.

If you see… think…

Epigastric pain that improves with eating → duodenal ulcer (H pylori)
Urease ⁺, curved, flagellated gram ⁻ rod in the stomach → H pylori
How it survives acid → urease makes ammonia
Gastric lymphoma that regresses with antibiotics → MALT lymphoma
Class I carcinogen linked to intestinal-type gastric cancer → H pylori
Best non-invasive test for cure → urea breath test or stool antigen
Test that stays positive after cure → serology
PPI + clarithromycin + amoxicillin → triple therapy
Black tongue during ulcer treatment → bismuth
Penicillin-allergic patient → swap amoxicillin for metronidazole